1. P. R. Vasos, J. B. Hall, R.KŸmmerle, D. Fushman "Measurement of 15N relaxation in deuterated amide groups in proteins using direct nitrogen detection", J. Biomol. NMR 36 (2006) in press.
2. M. Sadqi, D.Fushman, V.Mu–oz "Atom-by-atom analysis of global downhill protein folding" Nature 442 (2006) 317-321.
3. Ya.Ryabov, D.Fushman "Analysis of Interdomain Dynamics in a Two-Domain Protein Using Residual Dipolar Couplings Together with 15N Relaxation Data" Magnetic Resonance in Chemistry 44 (2006) 143-151.
4. J.B.Hall, D.Fushman "Variability of the 15N Chemical Shielding Tensors in the B3 Domain of Protein G from 15N Relaxation Measurements at Several Fields. Implications for Backbone Order Parameters" J. Amer. Chem. Soc. 128 (2006) 128, 7855-7870.
5. Ya.Ryabov, D.Fushman "Interdomain Mobility in Di-Ubiquitin Revealed by NMR" Proteins: Structure, Function, and Bioinformatics 63 (2006) 787-796.
6. S.Raasi, R.Varadan, D.Fushman, C.M.Pickart. "Diverse polyubiquitin interaction properties of ubiquitin-associated domains" Nature Struct Mol Biol 12 (2005) 708-714.
7. R.Varadan, M. Assfalg, S. Raasi, C. Pickart, D. Fushman, "Structural determinants for selective recognition of a Lys48-linked polyubiquitin chain by a UBA domain" Molecular Cell 18 (2005) 687-698.
8. A.D.J.van Dijk, D.Fushman, A.M.J.J.Bonvin, "Various strategies of using residual dipolar couplings in NMR-driven protein docking: application to Lys48-linked di-ubiquitin and validation against 15N-relaxation data", Proteins: Structure, Function, and Bioinformatics 60 (2005) 367-381.
9. P.R.Vasos, J.B.Hall, D.Fushman, "Spin-State Selection for Increased Confidence in Cross-Correlation Rates Measurements", J. Biomol. NMR 31 (2005) 146-154.
10. R. Verma, N.R. Peters, M. DÕOnofrio, G.P. Tochtrop, K.M. Sakamoto, R. Varadan, M. Zhang, P. Coffino, D. Fushman, R. J. Deshaies, R. W. King "Ubistatins Inhibit Proteasome-Dependent Degradation by Binding the Ubiquitin Chain", Science 306 (2004) 117-120.
11. C.Pickart, D.Fushman "Polyubiquitin chains: polymeric protein signals", Current Opinions in Chemical Biology 8 (2004) 610-616
12. O.Walker, R. Varadan, D.Fushman "Efficient and accurate determination of the overall rotational diffusion tensor of a molecule from 15N relaxation data using computer program ROTDIF", J. Magn. Reson. 168 (2004) 336-345.
13. D.Fushman, R. Varadan, M. Assfalg, O.Walker "Determining domain orientation in macromolecules by using spin-relaxation and residual dipolar coupling measurements" Progress NMR Spectroscopy, 44 (2004) 189-214.
14. R. Varadan, M. Assfalg, A. Haririnia, S. Raasi, C. Pickart, D. Fushman "Solution conformation of Lys63-linked di-ubiquitin chain provides clues to functional diversity of polyubiquitin signaling", J. Biol. Chem., 279 (2004) 7055-7063. (Published on the Web Nov.25, 2003).
15. J. B.Hall, and D. Fushman, "Direct measurement of the transverse and longitudinal 15N CSA/dipolar cross-correlation rate constants using 1H coupled HSQC spectra" Magnetic Resonance in Chemistry 41 (2003) 837-842.
16. J. B.Hall, and D. Fushman, "Characterization of the overall and local dynamics of a protein with intermediate rotational anisotropy: Differentiating between conformational exchange and anisotropic diffusion in the B3 domain of protein G" J. Biomol. NMR 27 (2003) 261-275.
17. J. B.Hall, K. T. Dayie, and D. Fushman, "Direct measurement of the 15N CSA/dipolar relaxation interference from coupled HSQC spectra" J. Biomol. NMR 26 (2003) 181-186.
18. R. Varadan, O.Walker, C.Pickart, D.Fushman "Structural properties of polyubiquitin chains in solution" J. Mol. Biol. 324(2002) 637-647
19. J.A.Camarero, D.Fushman, D.Cowburn, T.W.Muir "Peptide chemical ligation inside living cells: in vivo generation circular protein domain" Bioorg. Med. Chem. 9 (2001) 2479-2484.
20. J.A.Camarero, D.Fushman, S.Sato, I.Giriat, D.Cowburn, D.P.Raleigh, T.W.Muir "Rescuing a destabilized protein fold through backbone cyclization" J. Mol. Biol. 308 (2001) 1045-62.
21. R.Ghose, D.Fushman, D.Cowburn "Determination of the Rotational Diffusion Tensor of Macromolecules in Solution from NMR Relaxation Data with a Combination of Exact and Approximate Methods - Application to the Determination of Interdomain Orientation in Multidomain Proteins." J. Magn. Reson. 149 (2001) 204-217.
22. S.Pfeiffer, D.Fushman, D.Cowburn "Simulated and NMR derived backbone dynamics of a protein with significant flexibility: A comparison of spectral densities for the bARK PH domain." J. Amer. Chem. Soc. 123 (2001) 3021-36.
23. D.Fushman, R.Ghose, D.Cowburn "The effect of finite sampling on the determination of orientational properties: A theoretical treatment with application to interatomic vectors in proteins." J. Amer. Chem. Soc. 122 (2000) 10640-9.
24. P.Nicholas, D.Fushman, V.Ruchinky, D.Cowburn "The Virtual NMR Spectrometer: A Computer Program for Efficient Simulation of NMR Experiments Involving Pulsed Field Gradients." J. Magn. Reson. 145 (2000) 262-275.
25. D.Fushman, N.Tjandra, and D.Cowburn "An approach to direct determination of protein dynamics from 15N NMR relaxation at multiple fields, independent of variable 15N chemical shift anisotropy and chemical exchange contributions." J. Amer. Chem. Soc. 121 (1999) 8577-8582.
26. D.Fushman, R.Xu, and D.Cowburn "Direct determination of changes in interdomain orientation in Abl SH(32) on ligation: Use of orientational dependence of 15N NMR relaxation." Biochemistry 38 (1999) 10225-10230.
27. J.M.McDonnell, D.Fushman, C.L.Milliman, S.J.Korsmeyer, and D.Cowburn "Solution structure of the pro-apoptotic molecule, BID: a structural basis for apoptotic agonists and antagonists." Cell 96 (1999) 625-634.
28. S.Pfeiffer, D.Fushman, and D.Cowburn "Impact of Cl- and Na+ ions on simulated structure and dynamics of bARK1 PH domain." Proteins 34 (1999) 206-217.
29. C.LŸcke, D.Fushman, C.Ludwig, J.A.Hamilton, J.C.Sacchettini, and H.RŸterjans "A comparative study of the backbone dynamics of two closely related lipid binding proteins: bovine heart fatty acid binding protein and porcine ileal lipid bindingprotein." Molecular and Cellular Biochemistry 192 (1999) 109-121.
30. D.Fushman and D.Cowburn "The effect of noncollinearity of 15N-1H dipolar and 15N CSA tensors and rotational anisotropy on 15N relaxation rates, CSA/dipolar cross correlation, and TROSY." J. Biomol. NMR 13 (1999) 139-147.
31. D.Fushman, N.Tjandra, and D.Cowburn "Direct measurement of 15N chemical shift anisotropy in solution." J. Amer. Chem. Soc. 120 (1998) 10947-10952.
32. D.Fushman and D.Cowburn "Model-independent analysis of 15N chemical shift anisotropy from NMR relaxation data. Ubiquitin as a test example." J. Amer. Chem.Soc. 120 (1998) 7109-7110.
33. D.Fushman and D.Cowburn "Studying protein dynamics with NMR relaxation.In Structure, Motion, Interaction and Expression of Biological Macromolecules."Eds.R.H.Sarma, M.H.Sarma, Adenine Press, 1998, 63-77.
34. J.M.McDonnell, D.Fushman, S.M.Cahill, W.Zhou, A.Wolven, C.B.Wilson,T.D.Nelle, M.D.Resh, J.Wills, and D.Cowburn "Solution structure and dynamics ofthe bioactive retroviral M domain from Rous sarcoma virus." J. Mol. Biol. 279 (1998)921-928.
35. D.Fushman, T.Najmabadi-Haske, S.Cahill, J.Zheng, H.LeVine III, and D.Cowburn"The Solution Structure and Dynamics of the Pleckstrin Homology Domain of G Protein-Coupled Receptor Kinase 2 (b-Adrenergic Receptor Kinase 1): A binding partner of Gbg subunits." J. Biol. Chem. 273 (1998) 2835-2843.
36. J.M.McDonnell, D.Fushman, S.Cahill, B.J.Sutton, D.Cowburn. "Designed Peptide Mimics of FceRI: A Structural Comparison of Retroenantiomeric b-hairpin Peptides by NMR." In Peptides 1996. Eds. R.Ramage, R.Epton, Mayflower Scientific Ltd., 1998, p.627-628.
37. J.M.McDonnell, D.Fushman, S.Cahill, B.J.Sutton, D.Cowburn "Solution structuresof FceRI a-chain mimics: A b-hairpin peptide and its retroenantiomer." J. Amer. Chem. Soc. 119 (1997) 5321-5328.
38. D.Fushman, S.Cahill, & D.Cowburn "The main chain dynamics of the dynamin Pleckstrin Homology (PH) domain in solution: analysis of 15N relaxation with monomer/dimer equilibration." J. Mol. Biol. 266 (1997) 173-194.
39. D.Fushman, R.Weisemann, H.ThŸring, O.OhlenshlŠger, H.RŸterjans "Backbone dynamics of proteins studied by two-dimensional heteronuclear NMR spectroscopy and molecular dynamics simulations." Int. J. of Quant. Chem. 59 (1996) 291-300.
40. V.I.Shlenkin, D.Fushman, N.N.Vylegzhanina, L.O.Jagodina, A.E.AlÕtshuler "Global and local conformational transitions during heat-induced unfolding oflysozyme and bacterial ribonuclease in solution as revealed by spin-label ESR usingthe two-motional model." Molekulyarnaya Biologiya 30 (1996) 864-875 (in Russian)(English translation: Molecular Biology 30 (1996), No.4, Part 2, 509-515).
41. J.Zheng, S.M.Cahill, M.Lemmon, D.Fushman, J.Schlessinger, D.Cowburn "Identification of the binding site for acidic phospholipids on the dynamin PH domain of dynamin: Implications for stimulation of GTPase activity."J. Mol. Biol. 255 (1996) 14-21.
42. D.Fushman, S.M.Cahill, M.A.Lemmon, J.Schlessinger, D.Cowburn "Solution structure of Pleckstrin homology domain of dynamin by heteronuclear NMR."Proc. Natl. Acad. Sci. USA 92 (1995) 816-820.
43. D.Fushman, O.OhlenshlŠger, H.RŸterjans "Determination of the backbone mobility of ribonuclease T1 and its 2\'GMP complex using molecular dynamics simulations and NMR relaxation data." J. Biomol. Struct. & Dynamics 11 (1994) 1377-1402.
44. D.Fushman, R.Weisemann, H.ThŸring, H.RŸterjans "Backbone dynamics of ribonuclease T1 and its complex with 2\'GMP studied by two-dimensional heteronuclear NMR spectroscopy." J. Biomol. NMR 4 (1994) 61-78.
45. V.I.Shlenkin, D.A.Fushman, N.N.Vylegzhanina, L.O.Jagodina, V.D.Fedotov "Investigation of the molecular motion of spin-labeled lysozyme in solution by the use of ESR spectra and electron-spin relaxation." J. Appl. Magn. Reson. 5 (1993) 249-261.
46. N.K.Balabaev, A.S.Lemak, D.A.Fushman, Yu.V.Mironova "Simulation of a spin label behavior on a model surface." SPIE 1402 (1990) 53-69.
47. D.A.Fushman "Surface fractality of proteins from theory and NMR data." J. Biomol. Struct. & Dynamics 7 (1990) 1333-1344.
48. N.K.Balabaev, D.A.Fushman, A.S.Lemak, Yu.V.Mironova "Molecular dynamics simulation of a spin label on a model surface." Preprint of the Scientific Centre for Biological Research USSR Acad. Sci., Pushchino, 1990 22 pp.
49. D.A.Fushman "Rotational diffusion of globular proteins in solutions: Influence of the roughness of protein globule surface." In Modern Problems of Physico-Chemical Biology. Kazan, 1988 p.13-22 (in Russian).
50. D.A.Fushman "To saturation of inhomogeneously broadened lines in disordered spin systems in presence of phonon bottleneck." Radiospectroscopiya (Perm\') 1988p.67-74 (in Russian).
51. D.A.Fushman "Saturation of the two-level systems in glasses under phonon bottleneck conditions." Preprint VINITI No 939-85, (1985) 8 pp. (in Russian).
52. B.I.Kochelaev, D.A.Fushman "Sound absorption in glasses, caused by the interactionof two-level systems." Preprint VINITI No 697-85, (1985) 6 pp. (in Russian).
53. D.A.Fushman "To the theory of spectral diffusion in disordered spin systems with correlation." Preprint VINITI No 5155-84 (1984) 16 pp. (in Russian).
54. B.I.Kochelaev, D.A.Fushman "Sound absorption in glasses due to interaction of two-level systems." Fizika Tverdogo Tela 27 (1985) 2779-2781 (English translation:Soviet Physics - Solid State 27 (1985) 1670-1672).
55. A.A.Antipin, B.I.Kochelaev, S.B.Orlinskii, D.A.Fushman, V.I.Shlenkin "Influence of two-level systems on electron phase relaxation in phosphate glasses at low temperatures." ZhETP 88 (1985) 1001-1011 (English translation: Soviet Physics -JETP 61 (1985) 589-594).
56. D.A.Fushman "Saturation of tunneling states in glasses in the presence of the phonon bottleneck." Physica Status Solidi (b) 129 (1985) K21-K25.
57. D.A.Fushman "Kinetic properties of the two-level systems in glasses with account of tunneling." Physica Status Solidi (b) 127 (1985) 679-688.

Chapters in books:                                               

1. D.Fushman and D.Cowburn "Studying protein dynamics with NMR relaxation." In: Structure, Motion, Interaction and Expression of Biological Macromolecules. Eds.R.H.Sarma, M.H.Sarma, Adenine Press, 1998, pp. 63-77.
2. D.Fushman and D.Cowburn "Nuclear Magnetic Resonance relaxation in determination of residue-specific 15N chemical shift tensors in proteins in solution: protein dynamics and structure, and applications of Transverse Relaxation Optimized Spectroscopy." In: Nuclear Magnetic Resonance of Biological Macromolecules. Eds. T.L.James, V.Dštsch, and U.Schmitz. (Methods in Enzymology, vol. 339), Academic Press, 2001, pp. 109-126.
3. D.Fushman "Determination of protein dynamics using 15N relaxation measurements". In: BioNMR in drug research, ed. O.Zerbe, VCH-Wiley, Ch.12, pp. 283-308, 2003.
4. D.Fushman and D.Cowburn "Characterization of Inter-Domain Orientations in Solution Using the NMR Relaxation Approach." In: Protein NMR for the Millenium. (Biological Magnetic Resonance vol. 20) Eds. N. R. Krishna, L. Berliner, Kluwer, pp, 53-78, 2003.
5. J.B.Hall, O.Walker, and D.Fushman "Characterization of the overall rotational diffusion of a protein from 15N relaxation measurements and hydrodynamic calculations." In: Protein NMR techniques (Methods in Molecular Biology, vol. 278), Ed. A.K.Downing, Humana Press Inc, (2004) Ch.10.
6. R.Varadan, M.Assfalg, and D. Fushman "Using NMR spectroscopy to monitor ubiquitin chain conformation and interactions with ubiquitin-binding domains" In: Ubiquitin and Protein Degradation, Ed. R.J.Deshaies (Methods in Enzymology, Vol.399, part B), in press.